Archivio istituzionale della ricerca dell'Università degli Studi di Palermo
IRIS è il sistema di gestione integrata dei dati della ricerca (persone, pubblicazioni, progetti, attività) adottato dall’Università di Palermo, e ha lo scopo di raccogliere, conservare, documentare, e diffondere ad accesso aperto le informazioni relative alla produzione scientifica degli autori afferenti all’Ateneo.
EnglishWe compared the performance of molecular dynamics (MD)-derived pharmacophore modeling approaches, Common Hit Approach (CHA), and the Molecular dYnamics SHAred PharmacophorE (MYSHAPE) approach, with semi-flexible constrained/unconstrained docking. The aim of this work is to enrich the hit-list of a virtual screening on CDK-2 known inhibitors as a case study. Cyclin-dependent kinases (CDKs) deregulation is associated with cancer growth. CDKs are an attractive target for anticancer agents. MD-derived pharmacophore models have been obtained with LigandScout 4.2.1. Docking analysis has been performed through Glide 7.6. The results highlighted the MYSHAPE approach has a better performance when multiple target-ligand complexes are available (ROC5% = 0.99). Moreover, the use of short molecular dynamics simulations improves the performance of the screening (ROC5% = 0.98–0.99) with respect to docking (ROC5% = 0.89–0.94). Outcomes of this work indicate that these approaches are highly suitable for prospective screening by a non-expert, and could be useful for the identification of novel CDK-2 inhibitors.
Culletta G., Almerico A.M., & Tutone M. (2020). Comparing molecular dynamics-derived pharmacophore models with docking: A study on CDK-2 inhibitors. CHEMICAL DATA COLLECTIONS, 28, 1-8.
| Data di pubblicazione: | 2020 |
| Titolo: | Comparing molecular dynamics-derived pharmacophore models with docking: A study on CDK-2 inhibitors |
| Autori: | TUTONE, Marco (Corresponding) |
| Citazione: | Culletta G., Almerico A.M., & Tutone M. (2020). Comparing molecular dynamics-derived pharmacophore models with docking: A study on CDK-2 inhibitors. CHEMICAL DATA COLLECTIONS, 28, 1-8. |
| Rivista: | |
| Digital Object Identifier (DOI): | http://dx.doi.org/10.1016/j.cdc.2020.100485 |
| Abstract: | We compared the performance of molecular dynamics (MD)-derived pharmacophore modeling approaches, Common Hit Approach (CHA), and the Molecular dYnamics SHAred PharmacophorE (MYSHAPE) approach, with semi-flexible constrained/unconstrained docking. The aim of this work is to enrich the hit-list of a virtual screening on CDK-2 known inhibitors as a case study. Cyclin-dependent kinases (CDKs) deregulation is associated with cancer growth. CDKs are an attractive target for anticancer agents. MD-derived pharmacophore models have been obtained with LigandScout 4.2.1. Docking analysis has been performed through Glide 7.6. The results highlighted the MYSHAPE approach has a better performance when multiple target-ligand complexes are available (ROC5% = 0.99). Moreover, the use of short molecular dynamics simulations improves the performance of the screening (ROC5% = 0.98–0.99) with respect to docking (ROC5% = 0.89–0.94). Outcomes of this work indicate that these approaches are highly suitable for prospective screening by a non-expert, and could be useful for the identification of novel CDK-2 inhibitors. |
| Appare nelle tipologie: | 1.01 Articolo in rivista |
File in questo prodotto:
| File | Descrizione | Tipologia | Licenza | |
|---|---|---|---|---|
| Manuscript just accepted.pdf | Articolo principale | Versione Editoriale | Administrator Richiedi una copia |
Copyright © 2021