We study the translocation dynamics of a short polymer moving in a noisy environment and driven by an oscillating force. The dynamics is numerically investigated by solving a Langevin equation in a two-dimensional domain. We consider a phenomenological cubic potential with a metastable state to model the polymer-pore interaction and the entropic free energy barrier characterizing the translocation process. The mean first translocation time of the center of inertia of polymers shows a nonmonotonic behavior, with a minimum, as a function of the number of the monomers. The dependence of the mean translocation time on the polymer chain length shows a monotonically increasing behavior for high values of the number of monomers. Moreover, the translocation time shows a minimum as a function of the frequency of the oscillating forcing field for all the polymer lengths investigated. This finding represents the evidence of the resonant activation phenomenon in the dynamics of polymer translocation, whose occurrence is maintained for different values of the noise intensity.

Pizzolato, N., Fiasconaro, A., Persano Adorno, D., Spagnolo, B. (2013). Translocation dynamics of a short polymer driven by an oscillating force. THE JOURNAL OF CHEMICAL PHYSICS, 138(5), 054902-1-054902-7 [dx.doi.org/10.1063/1.4789016].

Translocation dynamics of a short polymer driven by an oscillating force

PIZZOLATO, Nicola;FIASCONARO, Alessandro;PERSANO ADORNO, Dominique;SPAGNOLO, Bernardo
2013-01-01

Abstract

We study the translocation dynamics of a short polymer moving in a noisy environment and driven by an oscillating force. The dynamics is numerically investigated by solving a Langevin equation in a two-dimensional domain. We consider a phenomenological cubic potential with a metastable state to model the polymer-pore interaction and the entropic free energy barrier characterizing the translocation process. The mean first translocation time of the center of inertia of polymers shows a nonmonotonic behavior, with a minimum, as a function of the number of the monomers. The dependence of the mean translocation time on the polymer chain length shows a monotonically increasing behavior for high values of the number of monomers. Moreover, the translocation time shows a minimum as a function of the frequency of the oscillating forcing field for all the polymer lengths investigated. This finding represents the evidence of the resonant activation phenomenon in the dynamics of polymer translocation, whose occurrence is maintained for different values of the noise intensity.
2013
Settore FIS/07 - Fisica Applicata(Beni Culturali, Ambientali, Biol.e Medicin)
Settore FIS/03 - Fisica Della Materia
Pizzolato, N., Fiasconaro, A., Persano Adorno, D., Spagnolo, B. (2013). Translocation dynamics of a short polymer driven by an oscillating force. THE JOURNAL OF CHEMICAL PHYSICS, 138(5), 054902-1-054902-7 [dx.doi.org/10.1063/1.4789016].
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Utilizza questo identificativo per citare o creare un link a questo documento: https://hdl.handle.net/10447/74653
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