In recent years biological processes modelling and simulation have become two key issues in analyzing complex cellular systems. The computational requirements suggest to investigate alternative solutions to the common supercomputers and clusters in order to optimize and overcome computational bottleneck. The goal of this work is the design and the realization of an embedded processor for metabolic networks optimization in order to examine their behaviour and robustness under malfunctions of one or more nodes. The embedded processor has been prototyped on the Celoxica RC203E board, equipped with programmable FPGA technologies. A case studied outlining the E. Coli bacteria metabolic network is also presented.

Conti, V., Vitabile, S., Militello, C., Lanza, B., Sorbello, F. (2011). An Embedded Processor for Metabolic Networks Optimization. In proc. of 5th International Conference on Complex, Intelligent and Software Intensive Systems (pp.77-84). IEEE Press [10.1109/CISIS.2011.21].

An Embedded Processor for Metabolic Networks Optimization

VITABILE, Salvatore;MILITELLO, Carmelo;SORBELLO, Filippo
2011-01-01

Abstract

In recent years biological processes modelling and simulation have become two key issues in analyzing complex cellular systems. The computational requirements suggest to investigate alternative solutions to the common supercomputers and clusters in order to optimize and overcome computational bottleneck. The goal of this work is the design and the realization of an embedded processor for metabolic networks optimization in order to examine their behaviour and robustness under malfunctions of one or more nodes. The embedded processor has been prototyped on the Celoxica RC203E board, equipped with programmable FPGA technologies. A case studied outlining the E. Coli bacteria metabolic network is also presented.
Settore ING-INF/05 - Sistemi Di Elaborazione Delle Informazioni
2011
International Conference on Complex, Intelligent and Software Intensive Systems
Seoul, Korea
30 giugno - 2 luglio, 2011
5th
2011
2011
8
Conti, V., Vitabile, S., Militello, C., Lanza, B., Sorbello, F. (2011). An Embedded Processor for Metabolic Networks Optimization. In proc. of 5th International Conference on Complex, Intelligent and Software Intensive Systems (pp.77-84). IEEE Press [10.1109/CISIS.2011.21].
Proceedings (atti dei congressi)
Conti, V.; Vitabile, S.; Militello, C.; Lanza, B.; Sorbello, F.
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Utilizza questo identificativo per citare o creare un link a questo documento: https://hdl.handle.net/10447/74074
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